VarFish Manual
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Projects / Navigation

  • Project Access Control
  • Site-wide Search

Misc UI Features

  • User Menu
  • API Token Management
  • User Profile
  • Import Release Info

Tutorials

  • IGV Configuration
  • VarFish Kiosk Tutorial

Cases & Variants

  • Variants & Cases
  • Variant Statistics & QC
  • Variant Filtration
  • Project-Wide Queries and Stats
  • Variant Annotation

Resources

  • Databases

Administrator's Manual

  • Installation
  • Updating the Database
  • Extra Services
  • System Configuration
  • Ingesting Variants
  • Performance Tuning
  • Upgrade Varfish Installation
  • PAP Configuration
  • Data Backups

Variant Analysis SOPs

  • Introduction
  • Supporting SOPs
  • Variant Filtration SOPs

REST API

  • REST API Overview
  • Project Management API
  • Case Import API
  • Case & Query API
  • JSON Schema
  • Clinical Beacon Protocol

Developer's Manual

  • Installation
  • Installation (Windows)
  • Database Import
  • Development
  • Kiosk
  • Templates (for Issues etc.)
  • Checklists
  • Docker & Data Builds
  • GitHub Project Management

Notes

  • ClinVar Notes

Project Info

  • Contributors
  • Release Cycle
  • Glossary
  • Small Print
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