Variants & Cases
The variants are assigned to Cases. Use the Cases link on the left to see all cases in a project. Then, click on the case name to go to the case’s detail view.
Case Detail View
On the case detail view, you can see the following information:
Case detail information such a creation date, case name, and name of individuals.
The full pedigree information with the information whether variants are present for the individuals (i.e., whether it was sequenced).
- Flagged Variants
The variants flagged in the individual.
- Comment Variants
The variants that were commented in the individual.
- Background Jobs Overview
List of background job for this case, e.g., for file export generation.
Case Detail View Actions
On the top right, you can see the following button:
- Filter Case
This takes you to the Variant Filtration view. Here you can filter the case’s variant by a multitude of criteria including genotype, call quality, and variant effect.