VarFish Manual
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Projects / Navigation

  • Project Access Control
  • Site-wide Search

Misc UI Features

  • User Menu
  • API Token Management
  • User Profile
  • Import Release Info

Tutorials

  • IGV Configuration
  • VarFish Kiosk Tutorial

Cases & Variants

  • Variants & Cases
  • Variant Statistics & QC
  • Variant Filtration
  • Project-Wide Queries and Stats
  • Variant Annotation

Resources

  • Databases

Administrator's Manual

  • Installation
  • Updating the Database
  • Extra Services
  • System Configuration
  • Ingesting Variants
  • Performance Tuning
  • Upgrade Varfish Installation
  • PAP Configuration
  • Data Backups

Variant Analysis SOPs

  • Introduction
  • Supporting SOPs
  • Variant Filtration SOPs

REST API

  • REST API Overview
  • Project Management API
  • Case Import API
  • Case & Query API
  • JSON Schema
  • Clinical Beacon Protocol

Developer's Manual

  • Installation
  • Installation (Windows)
  • Database Import
  • Development
  • Kiosk
  • Templates (for Issues etc.)
  • Checklists
  • Docker & Data Builds
  • GitHub Project Management

Notes

  • ClinVar Notes

Project Info

  • Contributors
  • Release Cycle
  • Glossary
  • Small Print
VarFish Manual
  • »
  • Index
  • Edit on GitHub

Index

A | C | D | E | H | I | M | N | O | P | Q | S | U | V | W

A

  • AAB
  • ACGS
  • ACMG
  • AD

C

  • CADD
  • ClinVar

D

  • DP

E

  • ENSEMBL
  • Entrez
  • Exomiser

H

  • HiPhive
  • HTS

I

  • IGV

M

  • MEDLINE
  • MutationDistiller
  • MutationTaster

N

  • NCBI

O

  • OMIM

P

  • Phenix
  • Phive
  • PubMed

Q

  • QC

S

  • SNV
  • SOP

U

  • UCSC
  • UMD Predictor

V

  • Varsome

W

  • WES
  • WGS

© Copyright 2018-2021, BIH Core Unit Bioinformatics. Revision f20877c9.

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